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CN09_21165 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_21165" - Sugar ABC transporter ATP-binding protein in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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[Homology]
Score
CN09_21165Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (355 aa)    
Predicted Functional Partners:
CN09_21155
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (311 aa)
 
 
  0.851
CN09_21150
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (299 aa)
 
 
  0.851
CN09_21445
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (284 aa)
 
  0.712
CN09_21160
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (437 aa)
 
 
 
  0.708
CN09_26185
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (292 aa)
 
  0.688
CN09_23455
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (278 aa)
 
  0.674
CN09_25075
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (295 aa)
 
  0.669
CN09_21440
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (308 aa)
 
 
  0.669
CN09_29080
Thiamine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (282 aa)
 
  0.662
CN09_21175
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (327 aa)
 
          0.660
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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