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CN09_21170 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_21170" - 3-oxoacyl-ACP reductase in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_211703-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family (258 aa)    
Predicted Functional Partners:
CN09_21175
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (327 aa)
 
  0.936
CN09_21180
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (255 aa)
         
  0.856
CN09_21160
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (437 aa)
 
          0.721
CN09_21165
Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (355 aa)
              0.598
CN09_02760
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (328 aa)
 
 
  0.570
CN09_03380
2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (1107 aa)
   
 
  0.527
CN09_21155
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (311 aa)
 
          0.481
CN09_24265
LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (332 aa)
     
      0.456
CN09_21150
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (299 aa)
 
          0.451
CN09_16600
Cyclopropane-fatty-acyl-phospholipid synthase; Derived by automated computational analysis using gene prediction method- Protein Homology (419 aa)
       
  0.427
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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