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CN09_21175 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_21175" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_21175Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (327 aa)    
Predicted Functional Partners:
CN09_21170
3-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family (258 aa)
 
  0.936
CN09_21180
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (255 aa)
 
          0.905
CN09_21160
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (437 aa)
 
          0.763
CN09_24240
Aldolase; Derived by automated computational analysis using gene prediction method- Protein Homology (212 aa)
 
 
  0.736
CN09_24245
Serine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (426 aa)
 
          0.716
CN09_21165
Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (355 aa)
 
          0.660
CN09_21150
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (299 aa)
 
     
  0.645
CN09_24255
3-hydroxyisobutyrate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (307 aa)
 
          0.592
CN09_21155
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (311 aa)
 
          0.590
CN09_01295
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (243 aa)
 
 
  0.501
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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