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CN09_21250 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_21250" - 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_212502,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the HpcH/HpaI aldolase family (233 aa)    
Predicted Functional Partners:
CN09_21255
3-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family (269 aa)
 
          0.942
CN09_21260
Methylhydantoinase; Derived by automated computational analysis using gene prediction method- Protein Homology (558 aa)
 
     
  0.908
CN09_21265
Methylhydantoinase; Derived by automated computational analysis using gene prediction method- Protein Homology (687 aa)
 
     
  0.890
CN09_26870
Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (395 aa)
 
        0.771
CN09_21270
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (312 aa)
 
          0.708
CN09_21285
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (256 aa)
 
          0.621
cpsB
Mannose-1-phosphate guanyltransferase; Capsular polysaccharide colanic acid biosynthesis protein; catalyzes the formation of GDP-mannose from GTP and alpha-D-mannose 1-phosphate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the mannose-6-phosphate isomerase type 2 family (475 aa)
              0.582
CN09_21300
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (397 aa)
 
          0.580
CN09_21280
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (247 aa)
 
          0.548
CN09_21275
Aspartate aminotransferase; Catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method- Protein Homology (402 aa)
 
        0.541
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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