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CN09_21270 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_21270" - LysR family transcriptional regulator in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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[Homology]
Score
CN09_21270LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (312 aa)    
Predicted Functional Partners:
CN09_21255
3-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family (269 aa)
 
          0.826
CN09_21250
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the HpcH/HpaI aldolase family (233 aa)
 
          0.708
CN09_21285
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (256 aa)
 
     
  0.699
CN09_21275
Aspartate aminotransferase; Catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method- Protein Homology (402 aa)
 
     
  0.698
CN09_21260
Methylhydantoinase; Derived by automated computational analysis using gene prediction method- Protein Homology (558 aa)
 
          0.672
CN09_31005
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family (257 aa)
 
          0.668
CN09_21280
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (247 aa)
 
          0.664
CN09_21300
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (397 aa)
 
          0.652
CN09_31035
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (153 aa)
 
          0.646
CN09_21265
Methylhydantoinase; Derived by automated computational analysis using gene prediction method- Protein Homology (687 aa)
 
          0.630
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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