STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_21325Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology (281 aa)    
Predicted Functional Partners:
pyrG
CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates
     
 0.745
kdsA
2-dehydro-3-deoxyphosphooctonate aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the KdsA family
     
 0.745
CN09_07165
Preprotein translocase subunit SecG; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.675
CN09_21320
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.597
CN09_14405
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.585
CN09_24770
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.509
CN09_31965
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.492
CN09_30170
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.478
CN09_26690
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 
   0.458
CN09_24720
Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.429
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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