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CN09_21345 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_21345" - ABC transporter substrate-binding protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_21345ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (343 aa)    
Predicted Functional Partners:
CN09_21355
Nitrate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (272 aa)
 
   
  0.963
CN09_21350
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (255 aa)
 
     
  0.955
CN09_28815
Mannosyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (272 aa)
 
   
  0.853
CN09_33085
Mannosyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (273 aa)
 
   
  0.837
CN09_33080
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (258 aa)
 
     
  0.819
CN09_28810
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (293 aa)
 
     
  0.815
CN09_22360
Urea carboxylase; Derived by automated computational analysis using gene prediction method- Protein Homology (1178 aa)
              0.593
CN09_18415
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (270 aa)
 
     
  0.533
CN09_30130
Sulfonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (280 aa)
 
   
  0.521
CN09_30395
Sulfonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (279 aa)
 
   
  0.507
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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