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CN09_21410 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_21410" - Membrane protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_21410Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (127 aa)    
Predicted Functional Partners:
topA
DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA super [...] (888 aa)
              0.898
CN09_21405
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (467 aa)
              0.662
CN09_20025
UPF0262 protein CN09_20025; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the UPF0262 family (157 aa)
 
     
  0.651
CN09_17430
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (162 aa)
   
     
  0.612
CN09_08630
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (224 aa)
   
          0.601
CN09_10330
Ubiquinol-cytochrome C chaperone; Derived by automated computational analysis using gene prediction method- Protein Homology (185 aa)
   
          0.570
CN09_02965
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (196 aa)
   
     
  0.532
CN09_07045
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (201 aa)
   
          0.497
CN09_04075
DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method- Protein Homology (163 aa)
 
          0.477
CN09_13790
Transglutaminase; Derived by automated computational analysis using gene prediction method- Protein Homology (199 aa)
   
          0.454
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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