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CN09_21540 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_21540" - ABC transporter ATP-binding protein in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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Textmining
[Homology]
Score
CN09_21540ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (321 aa)    
Predicted Functional Partners:
CN09_21520
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (319 aa)
 
  0.963
CN09_21515
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (321 aa)
 
 
  0.933
CN09_21535
Methionine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (334 aa)
 
 
0.902
CN09_21530
N-ethylammeline chlorohydrolase; Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline; Derived by automated computational analysis using gene prediction method- Protein Homology (492 aa)
 
          0.884
CN09_21525
Cytosine deaminase; Derived by automated computational analysis using gene prediction method- Protein Homology (397 aa)
              0.854
CN09_21510
Peptide ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (518 aa)
 
 
  0.798
CN09_00965
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (309 aa)
 
  0.773
CN09_24710
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (279 aa)
 
  0.663
CN09_00970
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (329 aa)
 
 
  0.663
CN09_30215
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (333 aa)
 
  0.641
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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