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CN09_21655 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_21655" - Xaa-Pro aminopeptidase in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_21655Xaa-Pro aminopeptidase; Derived by automated computational analysis using gene prediction method- Protein Homology (388 aa)    
Predicted Functional Partners:
CN09_01825
Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology (1574 aa)
         
  0.951
CN09_21665
Allantoate amidohydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (417 aa)
 
 
 
  0.856
CN09_21685
Allophanate hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (241 aa)
   
        0.827
CN09_21660
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (212 aa)
              0.820
CN09_21675
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (214 aa)
              0.817
CN09_21670
3-phosphoglycerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family (315 aa)
   
   
  0.810
CN09_21680
Allophanate hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (323 aa)
              0.807
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (1000 aa)
   
   
  0.762
CN09_22360
Urea carboxylase; Derived by automated computational analysis using gene prediction method- Protein Homology (1178 aa)
   
        0.719
CN09_23555
Ferredoxin; Derived by automated computational analysis using gene prediction method- Protein Homology (972 aa)
 
        0.692
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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