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CN09_21700 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_21700" - ABC transporter substrate-binding protein in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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[Homology]
Score
CN09_21700ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (281 aa)    
Predicted Functional Partners:
CN09_21705
Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (216 aa)
   
  0.953
CN09_21710
Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (216 aa)
   
  0.950
CN09_21715
ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (260 aa)
 
 
  0.912
CN09_25600
Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (222 aa)
   
  0.834
CN09_21720
Arginase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the arginase family (316 aa)
     
 
  0.801
CN09_25595
Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (213 aa)
   
  0.791
glnP
Similar to permease component of ABC transporters; mutations impair ability of Escherichia coli to transport and utilize glutamine; Derived by automated computational analysis using gene prediction method- Protein Homology (218 aa)
   
  0.699
CN09_31680
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (221 aa)
   
  0.698
CN09_21635
Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (219 aa)
   
  0.692
CN09_21695
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (314 aa)
              0.676
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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