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CN09_21795 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_21795" - Peptide ABC transporter in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_21795Peptide ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (313 aa)    
Predicted Functional Partners:
CN09_21790
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (289 aa)
 
  0.978
CN09_21800
Peptide ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (508 aa)
 
 
  0.928
CN09_21785
Dihydroorotase; Derived by automated computational analysis using gene prediction method- Protein Homology (403 aa)
 
          0.918
CN09_13565
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (285 aa)
 
  0.853
CN09_26415
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (285 aa)
 
  0.832
CN09_33460
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (291 aa)
 
  0.829
CN09_31645
D-ala-D-ala transporter subunit; Derived by automated computational analysis using gene prediction method- Protein Homology (293 aa)
 
  0.802
CN09_23185
D-ala-D-ala transporter subunit; Derived by automated computational analysis using gene prediction method- Protein Homology (300 aa)
 
  0.800
CN09_33415
Nickel ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (275 aa)
 
  0.797
CN09_15920
Peptide transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (297 aa)
 
  0.793
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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