STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_21820Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology (85 aa)    
Predicted Functional Partners:
CN09_15020
Photosystem reaction center subunit H; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.677
rsmI
Ribosomal RNA small subunit methyltransferase I; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
       0.652
CN09_14175
UPF0102 protein CN09_14175; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0102 family
       0.652
CN09_28270
Probable intracellular septation protein A; Involved in cell division; probably involved in intracellular septation
       0.626
CN09_01305
UPF0391 membrane protein CN09_01305; Derived by automated computational analysis using gene prediction method: Protein Homology
  
    0.597
CN09_10865
Peptidoglycan-binding protein LysM; Derived by automated computational analysis using gene prediction method: Protein Homology
  
  
 0.542
CN09_12290
Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.459
CN09_21810
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+
       0.452
CN09_21830
Acetolactate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
  
 0.414
CN09_21825
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.410
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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