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CN09_21850 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_21850" - Peroxidase in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_21850Peroxidase; Derived by automated computational analysis using gene prediction method- Protein Homology (357 aa)    
Predicted Functional Partners:
CN09_21845
Bacteriocin; Derived by automated computational analysis using gene prediction method- Protein Homology (268 aa)
   
  0.997
CN09_28835
DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (649 aa)
              0.925
CN09_00915
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (652 aa)
              0.925
CN09_31570
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide (697 aa)
         
  0.916
tatC
Sec-independent protein translocase protein TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides (275 aa)
         
  0.827
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III (344 aa)
         
  0.777
CN09_21975
Adenylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology (736 aa)
              0.698
CN09_01960
Cu resistance protein; Derived by automated computational analysis using gene prediction method- Protein Homology (122 aa)
         
  0.655
CN09_34345
Copper resistance protein CopD; Derived by automated computational analysis using gene prediction method- Protein Homology (294 aa)
              0.621
CN09_14455
Oxygen-independent coproporphyrinogen-III oxidase-like protein; Involved in the biosynthesis of porphyrin-containing compound (392 aa)
              0.567
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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