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CN09_21870 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_21870" - Histidine kinase in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_21870Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (674 aa)    
Predicted Functional Partners:
CN09_21875
Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (464 aa)
 
 
  0.960
CN09_21880
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (92 aa)
     
 
  0.575
CN09_21885
Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method- Protein Homology (301 aa)
         
  0.540
CN09_21865
Chaperone protein ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family (870 aa)
         
  0.512
CN09_27775
MFS transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (553 aa)
 
          0.503
CN09_27655
Response regulator SirA; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the sulfur carrier protein TusA family (74 aa)
              0.472
CN09_24910
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (470 aa)
 
     
  0.467
CN09_15420
Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method- Protein Homology (763 aa)
         
  0.428
CN09_31335
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (498 aa)
 
     
  0.417
CN09_30385
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (450 aa)
 
 
  0.401
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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