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CN09_22045 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_22045" - Iron ABC transporter permease in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_22045Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (741 aa)    
Predicted Functional Partners:
CN09_22040
Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (342 aa)
 
     
  0.976
CN09_22050
Fe(3+) ions import ATP-binding protein FbpC; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system (354 aa)
 
     
  0.965
CN09_22055
Inositol-1-monophosphatase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the inositol monophosphatase superfamily (266 aa)
 
     
  0.962
CN09_05590
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (326 aa)
 
     
  0.851
CN09_22035
LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (335 aa)
 
          0.761
CN09_14155
Phosphoglycerate mutase; Derived by automated computational analysis using gene prediction method- Protein Homology (195 aa)
 
          0.636
CN09_30010
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (250 aa)
              0.626
CN09_28680
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family (473 aa)
              0.565
CN09_22060
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+ (107 aa)
              0.458
CN09_22065
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (160 aa)
              0.444
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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