STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspGType II secretion system protein G; Derived by automated computational analysis using gene prediction method: Protein Homology (147 aa)    
Predicted Functional Partners:
gspD
General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 
 0.999
CN09_22195
General secretion pathway protein GspE; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 0.999
CN09_22190
Cytochrome C biogenesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 0.997
CN09_22165
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.993
CN09_22185
General secretion pathway protein GspH; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.959
CN09_22215
Pilus assembly protein PilN; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.854
fabD
Acp s-malonyltransferase; Malonyl CoA-acyl carrier protein transacylase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
    0.654
CN09_01885
Belongs to the 5'-nucleotidase family
       0.644
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
       0.644
CN09_32925
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.644
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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