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CN09_22200 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_22200" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_22200Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (300 aa)    
Predicted Functional Partners:
CN09_22160
General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method- Protein Homology (713 aa)
   
   
  0.999
CN09_22195
General secretion pathway protein GspE; Derived by automated computational analysis using gene prediction method- Protein Homology (538 aa)
   
   
  0.901
CN09_22190
Cytochrome C biogenesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology (403 aa)
   
   
  0.896
CN09_22215
Pilus assembly protein PilN; Derived by automated computational analysis using gene prediction method- Protein Homology (341 aa)
         
  0.896
CN09_22185
General secretion pathway protein GspH; Derived by automated computational analysis using gene prediction method- Protein Homology (161 aa)
         
  0.893
CN09_22175
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (218 aa)
              0.851
CN09_22210
General secretion pathway protein GspM; Derived by automated computational analysis using gene prediction method- Protein Homology (201 aa)
              0.851
CN09_22205
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (183 aa)
              0.848
CN09_22180
N-terminal cleavage protein; Derived by automated computational analysis using gene prediction method- Protein Homology (124 aa)
              0.845
CN09_22170
Type II secretion system protein G; Derived by automated computational analysis using gene prediction method- Protein Homology (147 aa)
   
 
  0.586
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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