CN09_22395 protein (Agrobacterium rhizogenes)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

CN09_22395

Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (142 aa)

Predicted Functional Partners:

secY

0.797

CN09_10375

0.730

CN09_13275

0.705

CN09_13700

0.701

CN09_28825

0.641

CN09_04265

0.598

CN09_26470

0.575

CN09_07360

0.573

CN09_18090

0.559

CN09_10155

0.552

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_04265	CN09_10155	CN09_04265	CN09_10155	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.702
CN09_04265	CN09_13700	CN09_04265	CN09_13700	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.675
CN09_04265	CN09_18090	CN09_04265	CN09_18090	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.587
CN09_04265	CN09_22395	CN09_04265	CN09_22395	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.598
CN09_04265	CN09_28825	CN09_04265	CN09_28825	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.671
CN09_07360	CN09_22395	CN09_07360	CN09_22395	Multidrug ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.573
CN09_10155	CN09_04265	CN09_10155	CN09_04265	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.702
CN09_10155	CN09_18090	CN09_10155	CN09_18090	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.630
CN09_10155	CN09_22395	CN09_10155	CN09_22395	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.552
CN09_10375	CN09_22395	CN09_10375	CN09_22395	Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5’-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5’-phosphate; In the C-terminal section; belongs to the HTP reductase family	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.730
CN09_13275	CN09_13700	CN09_13275	CN09_13700	Antibiotic biosynthesis monooxygenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.505
CN09_13275	CN09_22395	CN09_13275	CN09_22395	Antibiotic biosynthesis monooxygenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.705
CN09_13275	CN09_28825	CN09_13275	CN09_28825	Antibiotic biosynthesis monooxygenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.557
CN09_13700	CN09_04265	CN09_13700	CN09_04265	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.675
CN09_13700	CN09_13275	CN09_13700	CN09_13275	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Antibiotic biosynthesis monooxygenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.505
CN09_13700	CN09_18090	CN09_13700	CN09_18090	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.673
CN09_13700	CN09_22395	CN09_13700	CN09_22395	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.701
CN09_13700	CN09_26470	CN09_13700	CN09_26470	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Peptidase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.473
CN09_18090	CN09_04265	CN09_18090	CN09_04265	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.587
CN09_18090	CN09_10155	CN09_18090	CN09_10155	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.630

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