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CN09_22510 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_22510" - Transcriptional regulator in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_22510Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (224 aa)    
Predicted Functional Partners:
CN09_22515
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (463 aa)
 
 
  0.974
CN09_22505
Iron ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (355 aa)
 
     
  0.886
CN09_33125
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (395 aa)
 
 
  0.723
CN09_28800
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (471 aa)
 
 
  0.711
CN09_15420
Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method- Protein Homology (763 aa)
   
 
  0.685
CN09_03650
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (1086 aa)
 
 
  0.646
CN09_15095
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (408 aa)
 
  0.620
CN09_24230
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method- Protein Homology (158 aa)
 
          0.614
CN09_24910
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (470 aa)
 
 
  0.598
CN09_28690
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (459 aa)
 
  0.597
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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