STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_22520Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aldehyde dehydrogenase family (510 aa)    
Predicted Functional Partners:
CN09_22525
FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.786
CN09_31230
Saccharopine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 0.579
CN09_18955
Saccharopine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 0.577
CN09_14440
L-lysine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 0.560
CN09_03380
2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 
 0.512
CN09_23555
Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology
  
  
 0.499
CN09_24680
4-aminobutyrate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
 
 0.494
CN09_22530
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.493
CN09_13595
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 
 0.484
CN09_26850
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
    0.428
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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