STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_22565Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology (189 aa)    
Predicted Functional Partners:
CN09_22560
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
     0.994
CN09_22570
PadR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.987
CN09_22575
Dienelactone hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.779
CN09_22555
Multidrug MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.686
CN09_14835
Dienelactone hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.560
tldD
Protease TldD; Responsible for the proteolytic maturation of the E. coli pMccB17 plasmid-encoded microcin B17, an exported protein that targets the essential topoisomerase II DNA gyrase; degrades the E. coli plasmid F-encoded CcdA; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.553
CN09_27940
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase M16 family
 
     0.463
CN09_22550
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.456
CN09_20765
Acetylase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.411
CN09_22545
Nitrate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.406
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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