CN09_22565 protein (Agrobacterium rhizogenes)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

CN09_22565

Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (189 aa)

Predicted Functional Partners:

CN09_22560

0.994

CN09_22570

0.987

CN09_22575

0.779

CN09_22555

0.686

CN09_14835

0.560

tldD

0.553

CN09_27940

0.463

CN09_22550

0.456

CN09_20765

0.411

CN09_22545

0.406

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_14835	CN09_22560	CN09_14835	CN09_22560	Dienelactone hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.560
CN09_14835	CN09_22565	CN09_14835	CN09_22565	Dienelactone hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.560
CN09_20765	CN09_22560	CN09_20765	CN09_22560	Acetylase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.477
CN09_20765	CN09_22565	CN09_20765	CN09_22565	Acetylase; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.411
CN09_22545	CN09_22550	CN09_22545	CN09_22550	Nitrate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.984
CN09_22545	CN09_22555	CN09_22545	CN09_22555	Nitrate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Multidrug MFS transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	0.451
CN09_22545	CN09_22560	CN09_22545	CN09_22560	Nitrate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.444
CN09_22545	CN09_22565	CN09_22545	CN09_22565	Nitrate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.406
CN09_22550	CN09_22545	CN09_22550	CN09_22545	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Nitrate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.984
CN09_22550	CN09_22555	CN09_22550	CN09_22555	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Multidrug MFS transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	0.532
CN09_22550	CN09_22560	CN09_22550	CN09_22560	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.506
CN09_22550	CN09_22565	CN09_22550	CN09_22565	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.456
CN09_22550	CN09_22570	CN09_22550	CN09_22570	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	PadR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.444
CN09_22555	CN09_22545	CN09_22555	CN09_22545	Multidrug MFS transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	Nitrate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.451
CN09_22555	CN09_22550	CN09_22555	CN09_22550	Multidrug MFS transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.532
CN09_22555	CN09_22560	CN09_22555	CN09_22560	Multidrug MFS transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.782
CN09_22555	CN09_22565	CN09_22555	CN09_22565	Multidrug MFS transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.686
CN09_22555	CN09_22570	CN09_22555	CN09_22570	Multidrug MFS transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	PadR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.697
CN09_22555	CN09_22575	CN09_22555	CN09_22575	Multidrug MFS transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	Dienelactone hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.466
CN09_22560	CN09_14835	CN09_22560	CN09_14835	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Dienelactone hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.560

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