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CN09_22575 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_22575" - Dienelactone hydrolase in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Databases
Textmining
[Homology]
Score
CN09_22575Dienelactone hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (323 aa)    
Predicted Functional Partners:
gcvP
Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family (954 aa)
              0.912
CN09_22565
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (189 aa)
 
          0.779
CN09_22560
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (235 aa)
 
          0.744
CN09_22570
PadR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (108 aa)
 
          0.697
CN09_14220
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (208 aa)
 
   
  0.542
CN09_01390
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (279 aa)
              0.493
CN09_22555
Multidrug MFS transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (300 aa)
              0.466
CN09_14830
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (275 aa)
 
          0.451
CN09_20760
RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily (196 aa)
   
          0.444
CN09_04460
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (263 aa)
 
          0.441
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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