STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_22865Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology (149 aa)    
Predicted Functional Partners:
CN09_22860
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.989
CN09_22855
Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily
 
     0.965
CN09_22875
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.920
CN09_22870
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.919
CN09_22850
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+
       0.845
CN09_22845
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.734
CN09_26085
Calcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.690
CN09_20395
Urease-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.671
glnE
Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory regi [...]
       0.614
CN09_13255
NmrA family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.598
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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