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CN09_22875 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_22875" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_22875Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (405 aa)    
Predicted Functional Partners:
CN09_22870
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (495 aa)
          0.989
CN09_22865
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (149 aa)
 
          0.920
CN09_22855
Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily (190 aa)
 
          0.903
CN09_22860
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (149 aa)
 
          0.887
aspS
Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps- L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily (596 aa)
              0.698
CN09_22850
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+ (72 aa)
              0.618
CN09_22845
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (471 aa)
              0.543
CN09_03400
GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (220 aa)
              0.509
CN09_22470
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (2631 aa)
 
          0.494
CN09_02430
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (116 aa)
   
          0.458
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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