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CN09_22945 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_22945" - Sugar ABC transporter ATP-binding protein in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Textmining
[Homology]
Score
CN09_22945Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (351 aa)    
Predicted Functional Partners:
CN09_22935
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (283 aa)
 
  0.985
CN09_22940
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (276 aa)
 
  0.984
CN09_22950
Neutral trehalase; Derived by automated computational analysis using gene prediction method- Protein Homology (424 aa)
          0.948
CN09_22930
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (425 aa)
 
 
 
  0.865
CN09_22925
LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (333 aa)
 
     
  0.632
CN09_18870
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (593 aa)
 
 
  0.546
CN09_31485
Polyamine ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (263 aa)
 
  0.476
CN09_26135
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (312 aa)
 
  0.459
CN09_32045
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (293 aa)
 
 
  0.455
CN09_21445
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (284 aa)
 
 
  0.437
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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