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CN09_22950 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_22950" - Neutral trehalase in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurence
Coexpression
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Databases
Textmining
[Homology]
Score
CN09_22950Neutral trehalase; Derived by automated computational analysis using gene prediction method- Protein Homology (424 aa)    
Predicted Functional Partners:
CN09_22935
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (283 aa)
          0.989
CN09_22940
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (276 aa)
 
          0.972
CN09_22930
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (425 aa)
 
          0.952
CN09_22945
Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (351 aa)
          0.948
CN09_01675
Phosphoglucomutase; Derived by automated computational analysis using gene prediction method- Protein Homology (542 aa)
   
   
  0.861
CN09_16300
Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the monovalent cation-proton antiporter 2 (CPA2) transporter (TC 2.A.37) family (606 aa)
           
  0.843
pgi
Glucose-6-phosphate isomerase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the GPI family (541 aa)
     
   
  0.806
CN09_22925
LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (333 aa)
 
     
  0.767
CN09_21150
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (299 aa)
              0.739
CN09_14315
Trehalose 6-phosphate phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose (264 aa)
   
 
  0.660
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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