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CN09_23020 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_23020" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_23020Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (304 aa)    
Predicted Functional Partners:
CN09_15290
Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology (1225 aa)
         
  0.930
CN09_23025
Amino acid transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (205 aa)
              0.803
CN09_08075
Glyoxalase; Derived by automated computational analysis using gene prediction method- Protein Homology (146 aa)
         
  0.730
CN09_05765
Lipopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology (614 aa)
 
   
  0.561
CN09_04370
MFS transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (296 aa)
       
  0.552
macB
Macrolide export ATP-binding/permease protein MacB; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides (651 aa)
         
  0.543
CN09_22215
Pilus assembly protein PilN; Derived by automated computational analysis using gene prediction method- Protein Homology (341 aa)
 
     
  0.528
CN09_23015
Branched-chain-amino-acid aminotransferase; Catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; Derived by automated computational analysis using gene prediction method- Protein Homology (365 aa)
              0.527
CN09_16910
ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology (606 aa)
 
     
  0.517
CN09_30495
Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology (487 aa)
 
          0.508
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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