STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_23105ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology (266 aa)    
Predicted Functional Partners:
CN09_23100
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
 0.997
CN09_23110
Branched-chain amino acid abc transporter substrate-binding protein; Belongs to the ABC transporter superfamily
 
 0.980
CN09_23095
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.957
CN09_12760
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
 0.947
CN09_32185
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
 0.934
CN09_33370
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
 0.933
CN09_00605
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
 0.922
CN09_01060
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
 0.922
CN09_20690
Spermidine/putrescine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
 0.920
CN09_31480
Polyamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
 0.919
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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