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CN09_23135 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_23135" - ABC transporter permease in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurence
Coexpression
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Textmining
[Homology]
Score
CN09_23135ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family (347 aa)    
Predicted Functional Partners:
CN09_23130
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family (298 aa)
   
  0.983
CN09_23125
ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (305 aa)
   
  0.980
CN09_23145
Branched-chain amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (264 aa)
   
  0.928
CN09_23140
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (444 aa)
 
   
  0.925
CN09_21045
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family (293 aa)
   
  0.890
CN09_21030
Branched-chain amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (265 aa)
   
  0.881
CN09_21050
ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (255 aa)
   
  0.876
CN09_21035
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (445 aa)
 
   
  0.832
CN09_23120
Alkanesulfonate monooxygenase; Derived by automated computational analysis using gene prediction method- Protein Homology (369 aa)
 
          0.803
CN09_24620
Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family (365 aa)
   
  0.785
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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