STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_23170GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology (236 aa)    
Predicted Functional Partners:
CN09_23160
Probable 5-dehydro-4-deoxyglucarate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DapA family
 
   
 0.862
CN09_23165
Mannonate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.780
CN09_27090
2-pyrone-4,6-dicarboxylate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology
      0.706
CN09_21180
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.693
CN09_23055
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.664
CN09_23175
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.652
CN09_24100
NAD-dependent dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.652
CN09_19830
2,5-dioxovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.639
CN09_31750
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.637
CN09_00455
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.633
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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