CN09_23190 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_23190

Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology (281 aa)

Predicted Functional Partners:

CN09_23185

0.964

CN09_23195

0.960

CN09_23180

0.957

CN09_23175

0.914

CN09_29955

0.768

CN09_29610

0.731

CN09_29960

0.676

CN09_03865

0.659

CN09_22900

0.646

CN09_20265

0.630

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

page 1 of 4

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_03865	CN09_23180	Peptide ABC transporter permease; With OppABDF is involved in the transport of oligopeptides of up to 5 amino acids into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.495
CN09_03865	CN09_23190	Peptide ABC transporter permease; With OppABDF is involved in the transport of oligopeptides of up to 5 amino acids into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.659
CN09_03865	CN09_23195	Peptide ABC transporter permease; With OppABDF is involved in the transport of oligopeptides of up to 5 amino acids into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.507
CN09_03865	CN09_29960	Peptide ABC transporter permease; With OppABDF is involved in the transport of oligopeptides of up to 5 amino acids into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.501
CN09_20265	CN09_23175	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.452
CN09_20265	CN09_23180	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.740
CN09_20265	CN09_23190	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.630
CN09_20265	CN09_23195	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.492
CN09_20265	CN09_29960	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.738
CN09_22900	CN09_23180	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.569
CN09_22900	CN09_23190	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.646
CN09_22900	CN09_23195	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.495
CN09_22900	CN09_29960	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.622
CN09_23175	CN09_20265	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.452
CN09_23175	CN09_23180	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.958
CN09_23175	CN09_23185	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	D-ala-D-ala transporter subunit; Derived by automated computational analysis using gene prediction method: Protein Homology	0.955
CN09_23175	CN09_23190	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.914
CN09_23175	CN09_23195	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.930
CN09_23175	CN09_29610	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	D-ala-D-ala transporter subunit; Derived by automated computational analysis using gene prediction method: Protein Homology	0.724
CN09_23175	CN09_29955	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	D-ala-D-ala transporter subunit; Derived by automated computational analysis using gene prediction method: Protein Homology	0.769