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CN09_23230 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_23230" - Siderophore-interacting protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Databases
Textmining
[Homology]
Score
CN09_23230Siderophore-interacting protein; Derived by automated computational analysis using gene prediction method- Protein Homology (360 aa)    
Predicted Functional Partners:
CN09_23240
Ferrichrome-iron receptor; Derived by automated computational analysis using gene prediction method- Protein Homology (827 aa)
 
   
  0.776
CN09_23235
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (404 aa)
 
     
  0.764
CN09_23245
Iron dicitrate transport regulator FecR; Derived by automated computational analysis using gene prediction method- Protein Homology (335 aa)
 
        0.526
CN09_00785
Triostin synthetase I; Derived by automated computational analysis using gene prediction method- Protein Homology (550 aa)
 
   
  0.500
CN09_20780
Iron ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily (661 aa)
 
   
  0.484
CN09_03260
Hemin ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (310 aa)
 
        0.480
CN09_25280
Ferrichrome-iron receptor; Derived by automated computational analysis using gene prediction method- Protein Homology (740 aa)
 
   
  0.447
CN09_21475
Ferrichrome receptor; Derived by automated computational analysis using gene prediction method- Protein Homology (730 aa)
 
   
  0.433
CN09_20770
Iron-hydroxamate transporter ATP-binding subunit; Part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (266 aa)
   
  0.432
CN09_00735
Ligand-gated channel; Derived by automated computational analysis using gene prediction method- Protein Homology (716 aa)
 
   
  0.420
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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