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CN09_23240 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_23240" - Ferrichrome-iron receptor in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Textmining
[Homology]
Score
CN09_23240Ferrichrome-iron receptor; Derived by automated computational analysis using gene prediction method- Protein Homology (827 aa)    
Predicted Functional Partners:
CN09_23235
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (404 aa)
 
   
  0.913
CN09_23230
Siderophore-interacting protein; Derived by automated computational analysis using gene prediction method- Protein Homology (360 aa)
 
   
  0.776
CN09_23245
Iron dicitrate transport regulator FecR; Derived by automated computational analysis using gene prediction method- Protein Homology (335 aa)
 
   
  0.773
CN09_20780
Iron ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily (661 aa)
 
     
  0.667
CN09_25275
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (354 aa)
 
   
  0.631
CN09_20770
Iron-hydroxamate transporter ATP-binding subunit; Part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (266 aa)
   
  0.619
CN09_20775
Iron siderophore-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (302 aa)
 
   
  0.589
CN09_23250
RNA polymerase sigma70; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily (171 aa)
 
     
  0.562
CN09_30315
Iron dicitrate transport regulator FecR; Derived by automated computational analysis using gene prediction method- Protein Homology (317 aa)
 
   
  0.544
CN09_26790
Histidinol phosphatase; Derived by automated computational analysis using gene prediction method- Protein Homology (276 aa)
   
  0.487
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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