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CN09_23270 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_23270" - ABC transporter permease in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Textmining
[Homology]
Score
CN09_23270ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (276 aa)    
Predicted Functional Partners:
CN09_23265
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (326 aa)
 
  0.975
CN09_23275
ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (536 aa)
 
 
  0.937
CN09_23260
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (517 aa)
   
  0.893
CN09_24980
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (335 aa)
 
  0.845
CN09_24985
Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (529 aa)
   
  0.838
CN09_24960
Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (526 aa)
   
  0.813
CN09_25325
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (316 aa)
 
  0.804
CN09_23280
Homocysteine methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (304 aa)
 
          0.763
CN09_20610
ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (315 aa)
 
  0.757
CN09_26705
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (305 aa)
 
  0.715
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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