STRINGSTRING
CN09_23310 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_23310" - 6-phosphogluconate dehydrogenase in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_233106-phosphogluconate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (295 aa)    
Predicted Functional Partners:
CN09_23315
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (110 aa)
 
          0.929
CN09_23305
Gluconate 5-dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (252 aa)
 
 
  0.890
CN09_03380
2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (1107 aa)
   
   
  0.798
CN09_23325
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (364 aa)
 
          0.769
CN09_23320
LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (337 aa)
     
      0.625
CN09_15935
Gluconokinase; Derived by automated computational analysis using gene prediction method- Protein Homology (175 aa)
              0.608
CN09_23295
Phosphoesterase; Derived by automated computational analysis using gene prediction method- Protein Homology (343 aa)
 
     
  0.577
CN09_23330
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family (355 aa)
 
          0.570
CN09_23300
2-hydroxyacid dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family (315 aa)
 
     
  0.534
ilvD
Dihydroxy-acid dehydratase; Catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the IlvD/Edd family (612 aa)
   
   
  0.433
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (8%) [HD]