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CN09_23380 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_23380" - Oxidoreductase in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
Coexpression
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[Homology]
Score
CN09_23380Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (442 aa)    
Predicted Functional Partners:
CN09_23390
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology (316 aa)
 
        0.883
CN09_23385
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (299 aa)
 
          0.870
CN09_23395
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (557 aa)
 
          0.728
CN09_23410
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (161 aa)
 
          0.627
CN09_11705
Glutamine synthetase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the glutamine synthetase family (446 aa)
 
   
  0.621
CN09_19010
Sarcosine oxidase subunit beta; Derived by automated computational analysis using gene prediction method- Protein Homology (386 aa)
 
          0.620
CN09_23400
D-amino acid oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology (443 aa)
 
       
0.606
CN09_23405
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (232 aa)
 
     
  0.605
CN09_15785
Glutamine synthetase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the glutamine synthetase family (478 aa)
 
   
  0.563
CN09_11700
Aminotransferase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family (455 aa)
 
     
  0.556
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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