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CN09_23390 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_23390" - Diguanylate cyclase in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Textmining
[Homology]
Score
CN09_23390Diguanylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology (316 aa)    
Predicted Functional Partners:
CN09_23385
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (299 aa)
 
  0.978
CN09_23395
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (557 aa)
 
  0.928
CN09_23380
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (442 aa)
 
        0.883
CN09_33460
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (291 aa)
 
  0.802
CN09_26435
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (295 aa)
 
  0.800
CN09_24670
Peptide ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (306 aa)
 
  0.796
CN09_19120
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (288 aa)
 
  0.794
CN09_33290
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (288 aa)
 
  0.793
CN09_20265
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (293 aa)
 
  0.792
CN09_26415
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (285 aa)
 
  0.786
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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