STRINGSTRING
CN09_23405 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_23405" - Short-chain dehydrogenase in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_23405Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (232 aa)    
Predicted Functional Partners:
CN09_23400
D-amino acid oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology (443 aa)
 
     
  0.899
CN09_23410
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (161 aa)
 
     
  0.879
CN09_23395
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (557 aa)
 
          0.786
CN09_23380
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (442 aa)
 
     
  0.605
CN09_31695
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (253 aa)
   
          0.576
CN09_23390
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology (316 aa)
 
          0.572
CN09_23385
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (299 aa)
 
          0.551
CN09_03380
2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (1107 aa)
   
 
  0.527
CN09_24605
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (243 aa)
   
          0.480
CN09_26410
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (263 aa)
   
          0.465
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (7%) [HD]