STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_23425Glucokinase; Derived by automated computational analysis using gene prediction method: Protein Homology (345 aa)    
Predicted Functional Partners:
CN09_23445
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.914
CN09_23430
D-allulose-6-phosphate 3-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.912
CN09_23440
Epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.909
CN09_23450
Myo-inositol catabolism protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.905
CN09_23435
Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.901
CN09_23460
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 
 0.863
CN09_23465
Sugar ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.860
CN09_23420
Belongs to the ABC transporter superfamily
       0.856
CN09_23455
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
  
    0.852
nagA
N-acetylglucosamine-6-phosphate deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the metallo-dependent hydrolases superfamily. NagA family
 
   
 0.815
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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