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CN09_23590 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_23590" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_23590Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (254 aa)    
Predicted Functional Partners:
CN09_05765
Lipopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology (614 aa)
 
          0.778
CN09_25480
Lipopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology (400 aa)
 
          0.774
CN09_06240
Fumarate hydratase class I; Catalyzes the reversible hydration of fumarate to (S)- malate; Belongs to the class-I fumarase family (535 aa)
              0.761
CN09_30500
Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology (477 aa)
 
          0.750
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (1000 aa)
              0.749
CN09_25910
Peptidase M48; Derived by automated computational analysis using gene prediction method- Protein Homology (628 aa)
 
          0.742
CN09_22140
ATP-dependent Clp protease proteolytic subunit; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the peptidase S14 family (295 aa)
 
   
  0.738
CN09_20340
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (296 aa)
 
          0.731
CN09_25525
FkbM family methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (305 aa)
 
          0.731
CN09_25915
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (678 aa)
 
          0.730
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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