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CN09_23670 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_23670" - Membrane protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_23670Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (295 aa)    
Predicted Functional Partners:
CN09_03660
D-amino acid oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology (394 aa)
 
          0.837
CN09_03655
5-methylaminomethyl-2-thiouridine methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (244 aa)
              0.744
nnrD
Multifunctional fusion protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration; Belongs to the NnrD/CARKD family (491 aa)
   
        0.672
CN09_23665
NADPH-dependent FMN reductase; Derived by automated computational analysis using gene prediction method- Protein Homology (186 aa)
              0.551
CN09_01570
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (340 aa)
              0.503
CN09_03970
Extensin; Derived by automated computational analysis using gene prediction method- Protein Homology (259 aa)
   
          0.465
CN09_03850
2-dehydro-3-deoxygluconokinase; Derived by automated computational analysis using gene prediction method- Protein Homology (294 aa)
         
  0.455
CN09_23660
Ferredoxin reductase; Derived by automated computational analysis using gene prediction method- Protein Homology (408 aa)
              0.420
CN09_23655
MocE; Derived by automated computational analysis using gene prediction method- Protein Homology (104 aa)
              0.415
CN09_32870
NAD(FAD)-utilizing dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (402 aa)
 
     
  0.409
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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