CN09_23735 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_23735

Glycosyl transferase family A; Derived by automated computational analysis using gene prediction method- Protein Homology (340 aa)

Predicted Functional Partners:

CN09_23740

0.890

CN09_23705

0.870

CN09_23675

0.847

CN09_23750

0.839

CN09_23725

0.837

CN09_23755

0.837

CN09_23700

0.827

CN09_23695

0.819

CN09_26605

0.806

CN09_23690

0.798

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

page 1 of 6

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_23675	CN09_23690	Chain-length determining protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Glycosyl transferase family A; Derived by automated computational analysis using gene prediction method- Protein Homology	0.964
CN09_23675	CN09_23695	Chain-length determining protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Succinoglycan biosynthesis protein exoa; Derived by automated computational analysis using gene prediction method- Protein Homology	0.976
CN09_23675	CN09_23700	Chain-length determining protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method- Protein Homology	0.977
CN09_23675	CN09_23705	Chain-length determining protein; Derived by automated computational analysis using gene prediction method- Protein Homology	1,3-1,4-beta-glycanase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.915
CN09_23675	CN09_23725	Chain-length determining protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Succinoglycan biosynthesis protein exow; Derived by automated computational analysis using gene prediction method- Protein Homology	0.849
CN09_23675	CN09_23735	Chain-length determining protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Glycosyl transferase family A; Derived by automated computational analysis using gene prediction method- Protein Homology	0.847
CN09_23675	CN09_23740	Chain-length determining protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Exopolysaccharide production repressor exox; Derived by automated computational analysis using gene prediction method- Protein Homology	0.615
CN09_23675	CN09_23750	Chain-length determining protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.975
CN09_23675	CN09_23755	Chain-length determining protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.892
CN09_23675	CN09_26605	Chain-length determining protein; Derived by automated computational analysis using gene prediction method- Protein Homology	1,3-1,4-beta-glycanase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.925
CN09_23690	CN09_23675	Glycosyl transferase family A; Derived by automated computational analysis using gene prediction method- Protein Homology	Chain-length determining protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.964
CN09_23690	CN09_23695	Glycosyl transferase family A; Derived by automated computational analysis using gene prediction method- Protein Homology	Succinoglycan biosynthesis protein exoa; Derived by automated computational analysis using gene prediction method- Protein Homology	0.994
CN09_23690	CN09_23700	Glycosyl transferase family A; Derived by automated computational analysis using gene prediction method- Protein Homology	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method- Protein Homology	0.990
CN09_23690	CN09_23705	Glycosyl transferase family A; Derived by automated computational analysis using gene prediction method- Protein Homology	1,3-1,4-beta-glycanase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.928
CN09_23690	CN09_23725	Glycosyl transferase family A; Derived by automated computational analysis using gene prediction method- Protein Homology	Succinoglycan biosynthesis protein exow; Derived by automated computational analysis using gene prediction method- Protein Homology	0.787
CN09_23690	CN09_23735	Glycosyl transferase family A; Derived by automated computational analysis using gene prediction method- Protein Homology	Glycosyl transferase family A; Derived by automated computational analysis using gene prediction method- Protein Homology	0.798
CN09_23690	CN09_23740	Glycosyl transferase family A; Derived by automated computational analysis using gene prediction method- Protein Homology	Exopolysaccharide production repressor exox; Derived by automated computational analysis using gene prediction method- Protein Homology	0.626
CN09_23690	CN09_23750	Glycosyl transferase family A; Derived by automated computational analysis using gene prediction method- Protein Homology	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.792
CN09_23690	CN09_23755	Glycosyl transferase family A; Derived by automated computational analysis using gene prediction method- Protein Homology	Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.806
CN09_23690	CN09_26605	Glycosyl transferase family A; Derived by automated computational analysis using gene prediction method- Protein Homology	1,3-1,4-beta-glycanase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.735