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CN09_23830 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_23830" - ABC transporter permease in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_23830ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (336 aa)    
Predicted Functional Partners:
CN09_23835
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (375 aa)
 
 
  0.990
CN09_23825
Periplasmic alpha-galactoside-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (695 aa)
 
 
  0.989
CN09_23845
Alpha-galactosidase; Catalyses the hydrolysis of terminal non-reducing alpha-D-galactose residues in alpha-D-galactosides; Derived by automated computational analysis using gene prediction method- Protein Homology (456 aa)
 
     
  0.985
CN09_23840
Microcin ABC transporter ATP-binding protein; With YejAEF is involved in resistance to microcin C; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (556 aa)
 
 
 
  0.919
CN09_23820
Alpha-galactosidase; Derived by automated computational analysis using gene prediction method- Protein Homology (488 aa)
 
     
  0.859
CN09_23810
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (300 aa)
 
          0.789
CN09_23890
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (391 aa)
 
  0.782
CN09_29990
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (373 aa)
 
 
  0.754
CN09_31645
D-ala-D-ala transporter subunit; Derived by automated computational analysis using gene prediction method- Protein Homology (293 aa)
 
 
  0.645
CN09_13675
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (161 aa)
   
          0.642
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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