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CN09_23905 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_23905" - ABC transporter ATP-binding protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_23905ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (635 aa)    
Predicted Functional Partners:
CN09_23890
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (391 aa)
 
 
 
  0.925
CN09_23895
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (332 aa)
 
 
 
  0.919
CN09_23900
Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (638 aa)
 
   
  0.905
CN09_23885
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (404 aa)
 
          0.739
CN09_23875
Glycosyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (380 aa)
 
          0.737
CN09_23880
Glycosyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (419 aa)
 
          0.710
CN09_23910
Adenylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology (445 aa)
 
          0.651
CN09_23870
ABC transporter ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology (904 aa)
 
   
  0.611
CN09_13190
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (383 aa)
 
  0.551
CN09_13185
Microcin ABC transporter permease; With YejAEF is involved in resistance to microcin C; Derived by automated computational analysis using gene prediction method- Protein Homology (363 aa)
 
 
  0.488
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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