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CN09_23925 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_23925" - Methyltransferase in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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[Homology]
Score
CN09_23925Methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (292 aa)    
Predicted Functional Partners:
CN09_23930
Adenylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology (574 aa)
 
          0.900
CN09_23940
Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method- Protein Homology (248 aa)
 
          0.760
CN09_23935
Glycosyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (367 aa)
 
          0.701
CN09_23920
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (159 aa)
   
          0.667
CN09_23870
ABC transporter ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology (904 aa)
 
        0.656
CN09_23910
Adenylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology (445 aa)
   
          0.647
CN09_02665
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (188 aa)
   
          0.574
CN09_04700
Sugar phosphate isomerase; Derived by automated computational analysis using gene prediction method- Protein Homology (286 aa)
   
          0.570
CN09_05650
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (471 aa)
   
          0.563
CN09_23875
Glycosyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (380 aa)
   
          0.558
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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