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CN09_24005 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_24005" - 4-carboxymuconolactone decarboxylase in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_240054-carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method- Protein Homology (134 aa)    
Predicted Functional Partners:
CN09_24010
3-oxoadipate enol-lactonase; Derived by automated computational analysis using gene prediction method- Protein Homology (270 aa)
     
  0.997
CN09_24000
Protocatechuate 3,4-dioxygenase; Derived by automated computational analysis using gene prediction method- Protein Homology (249 aa)
 
     
  0.989
CN09_23995
Protocatechuate 3,4-dioxygenase; Derived by automated computational analysis using gene prediction method- Protein Homology (203 aa)
 
     
  0.989
CN09_23990
3-carboxy-cis,cis-muconate cycloisomerase; Derived by automated computational analysis using gene prediction method- Protein Homology (349 aa)
 
     
  0.975
CN09_03380
2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (1107 aa)
         
  0.902
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (1000 aa)
         
  0.870
CN09_17085
Pyruvate, phosphate dikinase; Catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the PEP-utilizing enzyme family (888 aa)
              0.823
CN09_24020
Catalyzes the formation of protocatechuate from 4-hydroxybenzoate; Derived by automated computational analysis using gene prediction method- Protein Homology (390 aa)
 
     
  0.816
CN09_24015
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (308 aa)
 
     
  0.788
CN09_23980
Amino acid-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (390 aa)
 
          0.655
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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