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CN09_24010 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_24010" - 3-oxoadipate enol-lactonase in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_240103-oxoadipate enol-lactonase; Derived by automated computational analysis using gene prediction method- Protein Homology (270 aa)    
Predicted Functional Partners:
CN09_24005
4-carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method- Protein Homology (134 aa)
     
  0.997
CN09_24015
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (308 aa)
 
     
  0.991
CN09_23995
Protocatechuate 3,4-dioxygenase; Derived by automated computational analysis using gene prediction method- Protein Homology (203 aa)
 
     
  0.988
CN09_24000
Protocatechuate 3,4-dioxygenase; Derived by automated computational analysis using gene prediction method- Protein Homology (249 aa)
 
     
  0.987
CN09_23990
3-carboxy-cis,cis-muconate cycloisomerase; Derived by automated computational analysis using gene prediction method- Protein Homology (349 aa)
 
     
  0.984
CN09_24020
Catalyzes the formation of protocatechuate from 4-hydroxybenzoate; Derived by automated computational analysis using gene prediction method- Protein Homology (390 aa)
 
     
  0.863
CN09_24030
IclR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (251 aa)
 
     
  0.848
CN09_32240
mRNA 3’-end processing factor; Derived by automated computational analysis using gene prediction method- Protein Homology (312 aa)
 
     
  0.819
CN09_32265
Major facilitator transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (443 aa)
 
 
 
  0.784
benD
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Catalyzes the degradation of 2-hydro-1,2-dihydroxy benzoate to catechol; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family (262 aa)
 
     
  0.781
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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