CN09_24025 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_24025

AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology (295 aa)

Predicted Functional Partners:

polA

0.950

CN09_24020

0.927

CN09_13595

0.800

CN09_34320

0.784

CN09_15290

0.782

CN09_23555

0.735

CN09_06305

0.678

CN09_23675

0.607

CN09_24000

0.557

cpsB

0.554

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_06305	CN09_13595	CN09_06305	CN09_13595	Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.838
CN09_06305	CN09_15290	CN09_06305	CN09_15290	Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source	Hemagglutinin; Derived by automated computational analysis using gene prediction method: Protein Homology	0.841
CN09_06305	CN09_23555	CN09_06305	CN09_23555	Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology	0.440
CN09_06305	CN09_23675	CN09_06305	CN09_23675	Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.744
CN09_06305	CN09_24025	CN09_06305	CN09_24025	Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	0.678
CN09_06305	CN09_34320	CN09_06305	CN09_34320	Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source	MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	0.715
CN09_06305	cpsB	CN09_06305	CN09_01720	Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source	Mannose-1-phosphate guanyltransferase; Capsular polysaccharide colanic acid biosynthesis protein; catalyzes the formation of GDP-mannose from GTP and alpha-D-mannose 1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mannose-6-phosphate isomerase type 2 family	0.800
CN09_06305	polA	CN09_06305	CN09_13050	Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity	0.726
CN09_13595	CN09_06305	CN09_13595	CN09_06305	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source	0.838
CN09_13595	CN09_15290	CN09_13595	CN09_15290	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Hemagglutinin; Derived by automated computational analysis using gene prediction method: Protein Homology	0.838
CN09_13595	CN09_23555	CN09_13595	CN09_23555	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology	0.438
CN09_13595	CN09_24025	CN09_13595	CN09_24025	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	0.800
CN09_13595	CN09_34320	CN09_13595	CN09_34320	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	0.669
CN09_13595	cpsB	CN09_13595	CN09_01720	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Mannose-1-phosphate guanyltransferase; Capsular polysaccharide colanic acid biosynthesis protein; catalyzes the formation of GDP-mannose from GTP and alpha-D-mannose 1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mannose-6-phosphate isomerase type 2 family	0.791
CN09_13595	polA	CN09_13595	CN09_13050	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity	0.999
CN09_15290	CN09_06305	CN09_15290	CN09_06305	Hemagglutinin; Derived by automated computational analysis using gene prediction method: Protein Homology	Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source	0.841
CN09_15290	CN09_13595	CN09_15290	CN09_13595	Hemagglutinin; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.838
CN09_15290	CN09_23555	CN09_15290	CN09_23555	Hemagglutinin; Derived by automated computational analysis using gene prediction method: Protein Homology	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology	0.942
CN09_15290	CN09_23675	CN09_15290	CN09_23675	Hemagglutinin; Derived by automated computational analysis using gene prediction method: Protein Homology	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.999
CN09_15290	CN09_24025	CN09_15290	CN09_24025	Hemagglutinin; Derived by automated computational analysis using gene prediction method: Protein Homology	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	0.782

page 1 of 4

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2020

Credits

Access

Info

About