STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_24025AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology (295 aa)    
Predicted Functional Partners:
polA
In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
   
 
 0.953
pobA
4-hydroxybenzoate 3-monooxygenase; Catalyzes the formation of protocatechuate from 4-hydroxybenzoate; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.932
CN09_13595
Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.802
CN09_34320
MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
   
 
 0.790
CN09_15290
Hemagglutinin; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.751
CN09_23555
Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.738
CN09_06305
Nad synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
     
 0.664
CN09_23675
Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 
 
 0.639
pcaH
Protocatechuate 3,4-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.625
pcaG
Protocatechuate 3,4-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.601
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (10%) [HD]
STRING is part of the ELIXIR infrastructure: it is one of ELIXIR's Core Data Resources.  Learn more >