STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_24055DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology (297 aa)    
Predicted Functional Partners:
CN09_33505
ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology
   
 0.985
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
     
 0.849
CN09_07480
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.811
CN09_12285
ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology
   
 0.736
CN09_24050
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.634
CN09_04375
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.626
ligA
DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
     
 0.620
CN09_08340
Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology
    
 0.596
CN09_09820
DNA processing protein DprA; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.581
CN09_05350
GlcNAc-PI de-N-acetylase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.568
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (11%) [HD]